Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs7015229 chr8:124077305 A/G 6.29E-5 133 37.3 49.93 56.7 KM Plot
TGCT rs7071670 chr10:1105473 T/A 1.75E-13 133 41.27 70.63 17.1 KM Plot
TGCT rs7080500 chr10:1129814 C/T 1.2E-5 134 45.7 36.87 33.52 KM Plot
TGCT rs7093915 chr10:1107341 A/G 5.23E-7 134 17.58 70.63 42.03 KM Plot
TGCT rs70990113 chr6:42591881 GT/G 2.46E-8 134 37.95 49.93 20.6 KM Plot
TGCT rs7100114 chr10:1110231 A/G 1.36E-13 134 41.97 70.63 17.1 KM Plot
TGCT rs7112744 chr11:10557871 A/T 5.62E-5 133 46.3 21.6 43.73 KM Plot
TGCT rs7114800 chr11:130969410 C/T 7.83E-7 134 0.57 54.57 41.97 KM Plot
TGCT rs71177450 chr19:37936839 G/GA 2.27E-13 132 45.1 36.12 17.1 KM Plot
TGCT rs71202404 chr13:21845468 T/TTAAGA 8.52E-7 129 46.3 37.3 14.42 KM Plot
TGCT rs71235144 chr7:76517567 C/A 0.000102 128 41.97 49.93 10.62 KM Plot
TGCT rs71310525 chr3:172536130 A/T 5.03E-5 134 42.03 41.92 47.38 KM Plot
TGCT rs7133161 chr12:107139540 A/G 0.000113 133 42.27 45.1 28.8 KM Plot
TGCT rs71396994 chr2:3485045 A/AT 2.2E-5 132 40.57 57.87 25.32 KM Plot
TGCT rs71526077 chr7:128623792 A/ACAGCCCATCTTTT 1.69E-5 134 42.27 30.3 17.1 KM Plot